rs49302717 SNP Detail

Summary

• ID
  rs49302717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTATTG CTTATTCCAA
  GTGAGTAATT CTGACGTTGA GATTTGTAAC TGGGAAGAAA AGATTAGTTT CAACATTTAC
  ACAGGAATGA GTCTCTCCAT GAAAGGCATG TATACACATA CCCCACCACT CAAGCTGGAA
  AGGAGAGAAA GTTAAGTCTC ATCAGAGATT CAATCAATAA TGCTGTATTA TTATAGCAAG
  M
  CTCTTTTCCT ACTAGTGATG AAAATGAATT CATTGTGTTA AGAAAATTTG TCTGTAATAC
  TTTCTAGAAT TGGATTACTG ATTCACTGTT TTGTGTTCGA ATTTATAAAA ATTCTCTGAA
  AATCTAAGTT CATAAGGATT CATGGAAAAT CTTGAATAAG CTGTGCTAAT CACATGATCT
  ATCTGTCTTA CCCTGATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961568	ENSMUSSNP5394880	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49302717					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103874 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1233 bp proximal
Rr626348	regulatory region 626348	1054 bp proximal
Rr626349	regulatory region 626349	1932 bp proximal