rs49302098 SNP Detail

Summary

• ID
  rs49302098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41301652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGCTG GCTTGCTCTG
  AAGAATGTGG GTCTCAAAGC TGTCTCTTGC AGTGGTTGGA AGTGGCCATC CAACTCCTTA
  GTGTTGTGTA CTTAACTACA CTGTTCACTC TTTTCCCTCT GGAAACACAG GAAGAACGGT
  GTTTGAAGAG CTGCCTGTGC TCTTGAAAGG CTTTCTCTAG TATGACTCCC CTTCTTAGCA
  Y
  CTCGGCAGTG TTTGCCATGC AACCCAATCA ATTCACTAAA TTAAATATAC GCTGTGTGAG
  ATGTGAGCAC AGAAAAACCC GCTGGGAGCA AAATAAATGC AAAGTGAGAT ATATCGTCCT
  TCCTCCCAAA CAAGTCCCTA AGCCTCTGTC CTGGCTTTGA CACATTTTGA TACCTAACCC
  ATAATCGCGA TAGTACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398564	NES15903445	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49302098					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398564	NES15903445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41301652 () rs orientation: forward

Symbol	Name	Function Class
Gm66487	predicted gene, 66487	within coordinates
Rr575933	regulatory region 575933	1502 bp proximal
Rr575934	regulatory region 575934	1677 bp proximal
Rr575935	regulatory region 575935	1762 bp proximal