rs49299448 SNP Detail

Summary

• ID
  rs49299448
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC ATTTTATACA ACTTAAGTGG
  M
  GGGCCCATTA CTGGGCTCCT TATAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136115283	ENSMUSSNP5136287	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss321031897	CHEV_3_153605924	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49299448					SNP	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648597 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1020 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1852 bp distal
Rr587801	regulatory region 587801	7 bp proximal
Rr587802	regulatory region 587802	1662 bp proximal
Tssr32439	transcription start site region 32439	1891 bp upstream
Tssr36252	transcription start site region 36252	1465 bp downstream
Tssr36253	transcription start site region 36253	1501 bp downstream
Tssr36254	transcription start site region 36254	1672 bp downstream