rs49297726 SNP Detail

Summary

• ID
  rs49297726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51919148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCACAGT CTATGAGCTC
  AACTGTAAGA GAGACAGGCA CGTACACGGT GAGCTGCTGC ACAGTCCAGT CTGTCCCAGT
  GCTGGGAAGA TACAGGCCAT TTTAAGATCA TCCCTCCTGG AAGTGGGGGG CAGCTTGGGT
  GTGCCCCGCT TCTCCTGCTT CACTGGGTGG GCCCATCCCC TGGACTGTTC TAGAAGACAC
  R
  GCATTTGGCT CTGCCTCTTG CTCCCAAGTC AGCCTGTTAT TTGGGGAGCA CTGTAGCACA
  CACCTGTACC CTTGTGGGGG CCACAAACCC AGACCCTTGG TTTTCCCTAT CGGCCCCCCT
  GGCTTCCAGA CACTGTTGAT CGGTACAACC AACAGGGCCT CCTACTGAAT TTTATTATTT
  TAGGCCTGCC GACCTTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411336	NES15908549	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49297726					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411336	NES15908549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51919148 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576437	regulatory region 576437	111 bp distal