rs49297021 SNP Detail

Summary

• ID
  rs49297021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAGTAG GATCCTAAAT
  GGCTTTTGTG AATTCCTTTT TTCCCCCCAA CCCACCCACA CAGTTTCAGA GAATTGTACC
  TCACCCAAGG AAGAAACCCT CGGCATGATA AGGAAGTCGG ACCCAGCTGT CCCCAGTTCC
  CATGACCCTG GGGCTCCATA GCAGGAGCTC ACAACATGAC CCAGGCATTC TTTCCCTTAG
  R
  ATGATACGAC CCTTGGCTGA TGTGTTGTTA GTGACATTGG TTTCATCATG ATGTTTTTTT
  TTTTTATTTA AGATTTATTT ATTGGTTATA TGTAAGTACA CTGTCGCTGT CTTCAGACAC
  TCCAGAAGAG GGAGTCAGAT CTCCTTACAG ATGGTTGTGA GCCACCATGT GGTTGCTGGG
  ATTTGAACTC CGGACCTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147294275	ENSMUSSNP3958985	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49297021					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668550 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1490 bp downstream
Rr598215	regulatory region 598215	1533 bp distal
Rr598216	regulatory region 598216	213 bp distal
Rr598217	regulatory region 598217	118 bp proximal
Rr598218	regulatory region 598218	1543 bp proximal