rs49294091 SNP Detail

Summary

• ID
  rs49294091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108447483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCTACCT GGTAATTCCG AACATCATCT ACCCACTCCT
  TCCTATGGTG CAAGGCCTTT TTTAAAAATA CCTTTGTCTT GAAGCATTTA ATATTGTTCC
  R
  CCACTGTCAC TCTCATCTAA GCTCCTGTCA CATGATCCAC ACCTTCCTGA GCACTTTTGG
  CTCTCGAACC TCAGCCTGGC TTGTGGACAG GTCACCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133502996	ENSMUSSNP1740001	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49294091					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108447483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35165	predicted gene, 35165			within coordinates
Gm44101	predicted gene, 44101			within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1			Intron
				Noncoding-Transcript-Variant
Rr636115	regulatory region 636115			1588 bp proximal
Tssr62385	transcription start site region 62385			1127 bp downstream