rs49293029 SNP Detail

Summary

• ID
  rs49293029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155596875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTCATGTGCA CAAGTGGACG GCGTTGCTAA TTATCTAATT
  ATTCTCCAGG CCCCTTGGAG AAAGGGCTGG ACTGGTGGGG GCTGGTAAGG GAAGGTCGTA
  R
  CTCATATGAT GCCAAACAGA CTCCCCCAGT GGGCCATCAC ATCTCAGGAG GTTAAAAGCA
  ACAACTCCAG GTCTGTCTGC CTAAGAAGTG TGTGTGTGGG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148058420	ENSMUSSNP5055199	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49293029					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155596875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			1189 bp distal
Procr	protein C receptor, endothelial			mRNA-UTR
				Noncoding-Transcript-Variant
Rr568116	regulatory region 568116			852 bp proximal
Rr568117	regulatory region 568117			968 bp proximal
Tssr21121	transcription start site region 21121			within coordinates
Tssr21122	transcription start site region 21122			29 bp upstream
Tssr21123	transcription start site region 21123			45 bp upstream
Tssr21124	transcription start site region 21124			100 bp upstream