rs49291679 SNP Detail

Summary

• ID
  rs49291679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33970942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTGAC AATCACCATG
  GAAACCCTCC TCTGGGCAGT CTGTGATGGA TTTTCTAGAT TGGGTTAATT GAGAAGGGAA
  GACCCACGCT ACGTGTGAGC CACAGTCTTC CACGGGAGGA CTGCTGTCTG GGACTGAACA
  AAAAGGAGAA AGCTGATCAA ACAGCATCCA TCACCCTCTG CTTCTTGACT GTATACACAG
  R
  TGCCTCCTGC TCCTGGCCCA CGCCCCCTGC TCCCCACTGC CATGCCTTCC CAGCTGTGAA
  TGGATCTTAA CATCACAATG AGCCTTCTTT TTTTTTTTTT TTTTTTTTTG CCTTTTGTGA
  TAGTAGTGAA AAAGTAAGGA ATACCTTGGA GTATTGGAGA TCGGACATTG CAGTAGTGTG
  GATGAGGGTG TGCTTCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133109713	ENSMUSSNP2741535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49291679					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33970942 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	1590 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	1835 bp distal
Rr628236	regulatory region 628236	1106 bp distal
Tssr60221	transcription start site region 60221	1798 bp upstream
Tssr60222	transcription start site region 60222	1631 bp upstream
Tssr60223	transcription start site region 60223	1587 bp upstream