rs49291168 SNP Detail

Summary

• ID
  rs49291168
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77002266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACGTA AGTAGAGCGA
  ACCCTGGGGC ACCAAGTTAT GTTTCCATCC AGGCTTACCT GGCTCTGCCC AGGAGACGCG
  TGCCACCAGC AGCAAGACCA AACTGGTGAG CACATCCAGG AGGTGCCACC TGCGGAGGAC
  AGTCACAGGT CAGTGGAGCC CAAGAGACCC GCAACCCCTC TCACCCTTTA GCCCTGAGCC
  K
  GCAAACCTGG GCGCCATCTC CCCAGGCCAG GCCGTCTGCG CCCGGATGCT GCACCCAGCT
  CCTCGGTGAG CCGCTAGCCC ACAGTGCTCC CGACCGCTGC TGCGGGCTAG GGCAGGGGTG
  GGCAGGGGCG GGACGGGGCG GAGACAGCTC GATGGGCGGG GCTCTGGGCT CAAGAAGCAG
  AGCTGGGCCA GAGAGGACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373594	NES15269439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49291168					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373594	NES15269439	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77002266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col18a1	collagen, type XVIII, alpha 1			Intron
				Splice-Site
Cpgi1754	CpG island 1754			within coordinates
Gm67721	predicted gene, 67721			208 bp upstream
Rr384956	regulatory region 384956			941 bp upstream
Rr434420	regulatory region 434420			106 bp proximal
Rr434421	regulatory region 434421			219 bp proximal
Tssr94211	transcription start site region 94211			187 bp upstream
Tssr98227	transcription start site region 98227			69 bp downstream
Tssr98228	transcription start site region 98228			113 bp downstream