rs49289959 SNP Detail

Summary

• ID
  rs49289959
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147517820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCAAACTTGT TATATAACTC AAGGTGACCT TGAGCTCTTG
  ATTTTTCTGC CTCTGTCCAC CAAGGTTTAT GCTATCACAC TGAGTTTATG CGGAGCTGGC
  G
  GTTGAACTCA TGCTGGGCAA GTTCTATACC ATATGAGCTA CACCCTAGCC TGCCCTAGTT
  TTAAATGCTA ATTTTTATTC TCAATAAAGC AGAAAAACAC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147960295	ENSMUSSNP409446	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49289959					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147517820 () rs orientation: forward

Symbol	Name	Function Class
Rr398818	regulatory region 398818	538 bp upstream
Rr398819	regulatory region 398819	937 bp upstream
Rr604487	regulatory region 604487	808 bp distal