rs49286836 SNP Detail

Summary

• ID
  rs49286836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTCAGC AGACCATGCC
  ACCTGAACAG AGCTTCTTTT TGGAGAGGTG GAAAGAGCGG ATGGTTCTGG AGCTGGGAGA
  AGACGGGTTT GCAGAATATA CTTCAAGTAA TTATCTTGCT TCTGGTTATG TGTGGTCACT
  GGTTTTTAGG AGATAGAGCA TTCCTGTCAG AAGAATGGAG CTTAAAAAAA AATCTTACTG
  R
  GGAAGTACTT TCAAATAGCA TTTCATGTCT GCTAATTTGC TTAATCTTCG TAGATACTAT
  TAACTGTAGT TCACACTTAA AGAAATGGAA ATAACAGAGA TCAAATTATT TGACAAACTT
  GCATAATTTA TAAACAACCT ATCAATTCTT TTCCATCTCT TGACAAAAGT CTAGGGTTTT
  TTTGGTTGGT TGGTTGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147789082	ENSMUSSNP2986232	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49286836					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1214 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr373996	regulatory region 373996	1546 bp upstream
Rr397362	regulatory region 397362	1527 bp downstream
Rr397363	regulatory region 397363	862 bp downstream
Rr566426	regulatory region 566426	1628 bp distal
Rr566427	regulatory region 566427	931 bp distal
Snx5	sorting nexin 5	1786 bp upstream
Tssr20524	transcription start site region 20524	1988 bp downstream
Tssr20525	transcription start site region 20525	1907 bp downstream
Tssr20526	transcription start site region 20526	1630 bp downstream
Tssr20527	transcription start site region 20527	1524 bp downstream
Tssr20528	transcription start site region 20528	946 bp downstream
Tssr26597	transcription start site region 26597	1779 bp upstream
Tssr26598	transcription start site region 26598	1732 bp upstream
Tssr26599	transcription start site region 26599	1716 bp upstream