rs49284704 SNP Detail

Summary

• ID
  rs49284704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33970108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTGTCC TGGAGAAGGT
  CAGCACTCCA TTCAGAAAAT GGCGTAAGCA TCACAAATAT CTGAACTAGA TGCCAAGGCT
  CCACTAAAAG CCAGCTTAGC CATTTGTCTC ACTATGTCAG GTGAAGAGAT GAACGAAGAC
  AAGAAGCAAT ATGGGCACAT TGAGGAAAGA ACCAATTCCA GCACTCCAGT GACCCCTCCA
  Y
  GTCTTCTGGG TACTGAGCCG AGGCTTAGGC TGAAACACAG GGAAGAGGAG TGCATAACCA
  AGTCGTCCTG GTCAAGGCAT TGTCCTGCCC GTCGTTGACC CGACATTGTT TCAACTCCCC
  TCTGTACTGC GCGGCAGTCC AGTGCGTTGC TACCCCAACT GTGGCCCACT GAATCTTTGC
  ACTGTTAACT GCTGAGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss133109694	ENSMUSSNP3874445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49284704					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33970108 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	756 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	1001 bp distal
Rr628236	regulatory region 628236	272 bp distal
Tssr60221	transcription start site region 60221	964 bp upstream
Tssr60222	transcription start site region 60222	797 bp upstream
Tssr60223	transcription start site region 60223	753 bp upstream