rs49283873 SNP Detail

Summary

• ID
  rs49283873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27158302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAACTGT GAATACCATC
  TTTTAAAGTA CAAGGAGAAA GCCTGATAAA ACTCAGAACT GACTGAAATG CCAAACTACA
  AGCAAATTAT TAAACAATAT GTCCTACAAT TACAATGGCT ATTTATTTTA AAAGGCTATT
  TAAAATAAAA CAAAAGTTAA CTATGTATGC CTATTTTGCT CTCCACCATT AGCAGCCAAA
  Y
  AGCTTATTTT GCTAAAGCTT TCTTAGTTTC TTCACGTTTC TTCACACTTG GGGCCGAAGA
  TGTCGCCCAG GCATTAACTG ATACACTGCT GTAGCAGAAG CCAGCGTGCA GTCCTCAGCA
  CCCATTGGAA GACTCCCATC TGCCCTGTTC CTCTGTCCTC TGCCTCCCCC ACACGCACAT
  ATTTGCCCTA CATGCATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380605	NES15885469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49283873					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380605	NES15885469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27158302 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	797 bp distal