rs49281421 SNP Detail

Summary

• ID
  rs49281421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128128822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGTACC ATCTCTCACC
  AAGCTCTGAA TAGTTAGAAA GAACTGTTGT CCTGAAGTCC TTCGTACGTC ATAATAAACT
  TTTGTTAAAA CAACAACAAA GATACTGTGA GAGTGTGCCT TCTCTAAACT CTGTTCCTGA
  AAGTCATTCC TTAGAGACAG AAAGGCCAGC AAGGTACAGG CATTAGGTCA TCAACTGGGG
  Y
  TTCTCTCAAA CCCACCCCAG GACATTCCTC TTGTCATTCC TTCCTTCCCC TGTTTGACAC
  AGCAGTTTAT GTCCCTTGGA CTGTCGAGGT AGAGAAGGGA CAGGCATACA GCTTCATTAT
  TACTGAGTAG GTGGCAAAGC CAAGACATAA ACCTGAATCT GCCCAGGCCA GTGCCTACAA
  TCCCAGTGTC TGGGAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147739325	ENSMUSSNP6325494	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323532979	CHEV_10_127730009	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49281421					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128128822 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	104 bp downstream
Tssr96388	transcription start site region 96388	454 bp downstream