rs49279970 SNP Detail

Summary

• ID
  rs49279970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:103235814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG AGTAGCTTGA AAGAACATCA
  R
  GTTCAGGAGA AAAAAAAAAA AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136877204	ENSMUSSNP6966619	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss323160965	CHEV_9_103260945	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49279970					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103235814 () rs orientation: forward

Symbol	Name	Function Class
Cdv3	carnitine deficiency-associated gene expressed in ventricle 3	Intron
D9Mgc22	DNA segment, Chr 9, MRC UK Mouse Genome Centre 22	1212 bp distal
Rr685916	regulatory region 685916	373 bp distal
Tssr91192	transcription start site region 91192	5 bp downstream