rs49278376 SNP Detail

Summary

• ID
  rs49278376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117653695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGACTC TCTGTGGTTT
  TCTATCTCAC ATTTCACTAA CTTGATAAAG ATCTCAGTTT ATTGCTGCTG TAAGTTTGTG
  GCCAGTGTCT TGCCAAATAC ATAATGAGTT GTGCTAATAT ATTTTACCGG GTAATAGCCC
  TTTTCCAAGT GTGATTTAAT GTCATTCTTA TTGTTCAGGA AATCTTCCTG CGTCTATCCA
  M
  GTTTCTAGGC ACGTGCTTCT GCCCCGCCTC CCCTGAGGTC ATTTCAAGGG TATTCTGATC
  ACTGAAACAC AGCTCTGTGC TTTAATAGCT CGAGCAATTA CCAGACAATT ACCCAGGGGT
  TCCTGTGCCC CTTCTTCCCC CCCCCCCACC CCCGAACTTT CTTGGCTTTC TTTAGAGTCC
  TGGATAAACC TTAAAACCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60933664	NES16203036	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C		A
ss321922995	CHEV_6_117626752	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49278376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933664	NES16203036	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117653695 () rs orientation: forward

Symbol	Name	Function Class
Rr637348	regulatory region 637348	1005 bp distal
Rr637349	regulatory region 637349	1122 bp distal
Rr637350	regulatory region 637350	1083 bp distal
Rr637351	regulatory region 637351	within coordinates
Rr637352	regulatory region 637352	277 bp proximal
Rr637353	regulatory region 637353	1577 bp proximal
Tssr1979	transcription start site region 1979	1546 bp upstream