rs49277109 SNP Detail

Summary

• ID
  rs49277109
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGGAAA ACTAGAACAA
  CTGCCATACA GTATCTAATG GCATACACAT GTATCAAACA ACTGCTTGCA AAACTAATCC
  CGTGGGTGGG CACACATATG TCATCCCAGT TACCCAAAGG CTGGCATTGG AGAGTCTCAA
  ATTCAAGGTC AGCCTGTGAA AATAGTGAGA CCTTAGCTCA AAAACTACTT AAAGGAAGCT
  K
  GGAATATTCC TCAGAGGTAT ACACTTGCCT AGCATGTGCA AGACCCTGGC TTAGTCCTCC
  AATCCTGCCT CCTAACTGTG TAGAATTTGA AATCTGTGTG AAATCATATG AAACCCATAC
  TTTCAACCCC ACTCCCCCCC CCAAAATCTT TATTTTCATG CATACTTTGT GAAAACAAAT
  TGAGACAAAA TTAAATTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320429659	CHEV_2_101479010	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49277109					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469198 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	758 bp proximal
Tssr25364	transcription start site region 25364	1249 bp downstream
Tssr25365	transcription start site region 25365	1373 bp downstream