rs49276391 SNP Detail

Summary

• ID
  rs49276391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66445343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTAGCCA TTGTTCCTAC TGATGTGATA AAACCAGCCT
  GAGGCCACAG GCTGGCAGCT TAACCTAGCT GTCTTCTCAT TTTCCAGACA GAAGGAAGAA
  Y
  AATTCCCACT GCATGTGGCC ATGTGATGTT GGATAATACA CAGGAATCCT ACACATAGGC
  TACTAGGTAG GTATAGAAAA TATGCTCAGT GGGTAAAGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63152013	NES17452124	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49276391					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63152013	NES17452124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66445343 () rs orientation: forward

Symbol	Name	Function Class
Gm15958	predicted gene 15958	within coordinates
Rr539711	regulatory region 539711	844 bp distal
Rr539712	regulatory region 539712	576 bp proximal
Rr539713	regulatory region 539713	618 bp proximal