rs49271740 SNP Detail

Summary

• ID
  rs49271740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124034456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGATTT CTGAGAGACA
  GGTCTAGAGA TAAGAATTTA GAGTTTGAAC GCTACTTCCT TTTAACAGAA TAACAGTGAT
  AGGTTCATAA CTGAGGACCT ATAAGTTCCA CAGCATGTGT TATTAATCTG ATTTATAATA
  AGGGGTCTGC AACCCTATAG GTGGAACAAC AATATGAACT AACCAGTACC CCTAGAGCTC
  R
  TGTCTCTAGC TGCATATGTA GCAGAAGATG GCCTAGTTGG CCATCATTGG GAAGAGAGGC
  CCCTTGGTCT TGCAAACTTT ATATGCCCTG GTACAGGGGA ACACCAGGGC CAAGAAGTGG
  GAGTGGGTGG GTAGGAAAGA GGGGAGGGGG GAGGGTATGG GGGACTTTTA GGATAGCATT
  TGAAATGTAA ATGAAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135782955	ENSMUSSNP409167	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320926571	CHEV_3_123943725	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49271740					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124034456 () rs orientation: forward

Symbol	Name	Function Class
Rr584580	regulatory region 584580	639 bp proximal