rs49271680 SNP Detail

Summary

• ID
  rs49271680
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA AACTGTACAT GAATAAAGAG
  A
  AGTGTCAAAA ATAATTTTAC TTTAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132961556	ENSMUSSNP5392266	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321735870	CHEV_6_8053434	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49271680					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103434 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1673 bp proximal
Rr626348	regulatory region 626348	1494 bp proximal