rs49270068 SNP Detail

Summary

• ID
  rs49270068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17062107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAGCCA GGGAGTATTC
  TTTTTTTTTT AAAGATTTAT TTATTATATA TAAGTACACT GTAGCTGTCT TCAGACACAC
  CAGAAGAGGG CGCCAGATCT CATTATGGAT GCTTGTGAGC CACCATGTGG TTGCTGGGAT
  TTGAACTCAG GACCTTTGGA AGAGCAGTCT TACCCGCTAA GCCATCTCTC CAGCCCAGGG
  R
  ATATTCTTCT GAGAAGTTTT GGGAAACACC TATACTACTC GCTTCCCTGA CCTTGCTTCT
  ACTCCCTCTC TCTATAGAAT GTCATTGTTC CTACAGGTCT ACCTCTCTCT GTGTAAACAG
  CATCTATACA CAACTTAAGA GCAAACAAAA CTCCCTAGGC CTGTCTACAT TGCTCAGTGT
  CCATGACAGC CCAGAGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60866960	NES15986467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		A
ss321753426	CHEV_6_17012108	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49270068					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866960	NES15986467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17062107 () rs orientation: forward

Symbol	Name	Function Class
Gm15473	predicted gene 15473	within coordinates
Rr626752	regulatory region 626752	1526 bp distal
Rr626753	regulatory region 626753	9 bp proximal
Rr626754	regulatory region 626754	369 bp proximal