rs49269415 SNP Detail

Summary

• ID
  rs49269415
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147517297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGGGGGTGTG TGGGTGCCTT GTCTAGGGAT GGGCAAGAGC
  TCTGAGACAG GGAGACCTTT AATTCCAGGA CAATCTGTGC TGTTTAGGGA AGTCTATTAA
  A
  AAAAAAAAAA AAAACAAAGC AAGGCAAAGT TGATCAACAA AAGTGCAATT ATATTACATA
  TATTAAATAG GTGACGTATA AAAGAAAACT GGGTGGGTGT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147960177	ENSMUSSNP5609666	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49269415					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147517297 () rs orientation: forward

Symbol	Name	Function Class
Rr398817	regulatory region 398817	1550 bp downstream
Rr398818	regulatory region 398818	1061 bp upstream
Rr398819	regulatory region 398819	1460 bp upstream
Rr604487	regulatory region 604487	285 bp distal