rs49268234 SNP Detail

Summary

• ID
  rs49268234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14294903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGGGCCT TCCTTTCACT CCTTTCCTCT TCCTCTTGCA
  TTTCCTGATT GCTGAGTCAT CTAAGGATAG CCATTGCATC AGACTGTGAT TTCAGACTCG
  W
  GCCAACTCGG AAAAGAAACA ATCACCGCCT GAGTTAGAAT GAAGATGAAA CGCACTCCCA
  GTCTCCCTGT GTATTCCCTC TTTCTGAGAA CTCCCTCTTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62078195	NES17156061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49268234					SNP	T	T	T	T	T	T	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078195	NES17156061	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14294903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6157	CpG island 6157	1432 bp proximal
Pdhb	pyruvate dehydrogenase (lipoamide) beta	1845 bp upstream
Rr389295	regulatory region 389295	within coordinates
Rr487854	regulatory region 487854	1320 bp distal
Rr487855	regulatory region 487855	within coordinates
Rr487856	regulatory region 487856	904 bp proximal
Rr487857	regulatory region 487857	1023 bp proximal
Rr487858	regulatory region 487858	1355 bp proximal
Tssr127398	transcription start site region 127398	1893 bp upstream
Tssr127399	transcription start site region 127399	1867 bp upstream