rs49266509 SNP Detail

Summary

• ID
  rs49266509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGATGA CATCCATGGC
  TGAATCTCTG TCTGACCTGG AATTCAGTAG CTGACCTAGG CCCAGCCTTA GCTCCGGTCT
  CAGGATGGCT CTGGCCAGCA TGATGTCAGG CATGGTCACA GAAGGAGGTA ATCACAGCCA
  TACTGGGGAC TTTGTGGGTA AGGGACCAGT AGAAATGTCT CCAAGCAAAC CTTTCCTGGC
  Y
  GGAGCCTGGA GACTTGCGAG GATACACAGC TTCGTGATCT GAAAGCTGCG CACACTGTTG
  TCTGCCTGCT CTGGGTGTGT GGGCACATGA GCATCTGCCT TGGCTACTAA CACTCCCTCC
  ACAAAAAAGT TCAACGCCAA CTGCATGGCG ATTTGCCATT TATAGGGCGT GGAAGCCTCA
  TCAAGGGTCT GTCTGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss147473503	ENSMUSSNP23963	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321330910	CHEV_4_131687768	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs49266509					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859164 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr377201	regulatory region 377201	1926 bp downstream
Rr600881	regulatory region 600881	474 bp proximal