rs49264360 SNP Detail

Summary

• ID
  rs49264360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGAAAC TGTCTTCACA
  GCCCACATGC TTCTACTTGG TTTATCTGAG GGTGGACCTG TAGGTGGCCG CTACAACTGA
  AGAGCAAAAC CCCTGACTGT ATTTAACTCC TGTCACCTGC ATCCCACTTG TCAAAAGGAT
  ACAGACTAAG AGATGTCCCC CGCTTAGCTG GAGGCAGCTG GAGGAAGCCA TGCAGTTACC
  R
  CTGAGGCCTG TAGGGGACGG AAGCACTGAC TTCCAGGCAG CAGAGAGAAA GGAACGGTTG
  GTCCCCTCAC CCCACCAAAT CTCCCCCACC TTAAACCCCT TGCTTTGGAG AGGAATGTGG
  GCTGTTATTA GGAAGAACTC CCCAGCCTCA GGAGAGCCGC CCTTGCCCTG CCTGGAGTTT
  CCTCACCCAG CAGTGGCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147540866	ENSMUSSNP2601157	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321351089	CHEV_4_134735048	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49264360					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906444 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	within coordinates
Rr601943	regulatory region 601943	3 bp proximal
Runx3	runt related transcription factor 3	1143 bp downstream