rs49260629 SNP Detail

Summary

• ID
  rs49260629
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147510741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTATATACA TACTCTACTG GGCCCCCCTC CAGCCCCTTG
  AGAACTCACC CCCAGCACAT TTTCCCCTCA ACTTCATGAA ATAAACACAC ACATACACAC
  G
  AGCGCACAAA CACACACTTC TGAAACAAAT ATCCAATAAG TGCTGCTTGT ATGTATTTGG
  GTACTTTTAG TTTTCATCTG TAGCTGAGAT AATCTTCAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss147959016	ENSMUSSNP199266	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49260629					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147510741 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	1577 bp upstream
Rr604485	regulatory region 604485	65 bp distal
Rr604486	regulatory region 604486	151 bp distal