rs49256737 SNP Detail

Summary

• ID
  rs49256737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122206780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAACTGA GCCCTTCCCC
  ATCAGATGGT CAAGTGTGGC ACAGAGTCTC CCTACATTTG TTCCTCTGAT TTTCCATAGT
  TATGTGGATA TATACATCCA TATTATATGC ATATCTGAAA TTCCATCCTC TCCTTCATTG
  TCATGAGCAT CACTGGTCTC TTGATGTAGC CTCTGAGTCC CACATTACAG GGATCCTCTG
  Y
  CGGAGCCCTT TTCCTTCTTG CTGTGGATCT GCACTGCTTC TAGACAGGAA GTCCTGGTAA
  CTGTTTCCAC CTTCCTACGT CCCAGGCCAG AAATGCCTAC CGATGGAATA TGAACAGTGA
  ATTTGCTTCT TAAGTAATGT TTCAAATAAA AATGCTTACT AGAAGAGAAA AAAAATTAAA
  AAGGGAGGGC TATATAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60442580	NES15946500	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49256737					SNP	C	T	C	T	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442580	NES15946500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122206780 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	1236 bp distal
Rr584324	regulatory region 584324	611 bp proximal