rs49254824 SNP Detail

Summary

• ID
  rs49254824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GCCGTTATAC TGATGTTTTA
  K
  TGGGCCTCCT GCCTGCTCTT AGGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146716550	ENSMUSSNP5878103	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320323724	CHEV_2_66095659	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49254824					SNP	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	728 bp distal
Rr397014	regulatory region 397014	812 bp downstream
Rr558173	regulatory region 558173	1021 bp distal
Rr558174	regulatory region 558174	1186 bp distal
Rr558175	regulatory region 558175	495 bp distal
Rr558176	regulatory region 558176	526 bp distal
Tssr24377	transcription start site region 24377	957 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	985 bp upstream