rs49254643 SNP Detail

Summary

• ID
  rs49254643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTGCTT TCTGGCTTGC
  TCATCCATGG CCTGCTTACC CATGGTTGCT TTCCTATACC ACCTAGGATC ATCTGCCCAG
  AGGTAGCACC ATCCACAACG GGATAAGCCC TTCCACATTA AACACCAAAT GAGAAAACGT
  CTCACAGAGT TGCCTAAAGG CCAATCGAAT GGAGGCTTTT TCTCAAGGGA GGCTCAAATG
  R
  GATACCCTGG CTTGTGTCAA GTTCACAAAA AACTAATCAG AACACCCCTT CTATGAGTAT
  TTCATACACA GAAATACAGA CAAACACGCA CGGAAGACAT AAATTATGTG TGTTATATGT
  GTGTGTATGT ATAATTTATC TATATAAGTT GCACACATAC ATAAATACAC AGGAGGCATA
  CATATATGTA CATTCACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111659	ENSMUSSNP4394639	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49254643					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1237 bp proximal
Rr587740	regulatory region 587740			1683 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1539 bp upstream
Tssr36239	transcription start site region 36239			1309 bp upstream