rs49249676 SNP Detail

Summary

• ID
  rs49249676
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95288567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGCTGG TCCCCGGCGC CCAGGGCTGG CTCTCCCATG
  GCAGCGGCTC CGAGAAGGAC CTGCGAGGGG AAGCGGAGTG AATGGGTGAG CCCAGTCTCC
  C
  GTCCAGATGC CTCCTCCGCC TGAGTAACGC CCACCCTCTA GTCTGCGGGC TCCTCCACTC
  ACCTGGAGCG GAGGGTGCGC CTCGGAGCGT CCCCAGATC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136828220	ENSMUSSNP2197388	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49249676					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95288567 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	Intron
Gm35915	predicted gene, 35915	947 bp upstream
Gm37805	predicted gene, 37805	890 bp upstream
Rr684785	regulatory region 684785	930 bp distal
Rr684786	regulatory region 684786	726 bp distal
Rr684787	regulatory region 684787	552 bp distal
Rr684788	regulatory region 684788	529 bp distal
Rr684789	regulatory region 684789	370 bp distal
Rr684790	regulatory region 684790	198 bp proximal
Rr684791	regulatory region 684791	852 bp proximal
Tssr86547	transcription start site region 86547	911 bp upstream
Tssr90901	transcription start site region 90901	1973 bp upstream
Tssr90902	transcription start site region 90902	1953 bp upstream
Tssr90903	transcription start site region 90903	1766 bp upstream
Tssr90904	transcription start site region 90904	594 bp downstream
Tssr90905	transcription start site region 90905	670 bp downstream
Tssr90906	transcription start site region 90906	687 bp downstream
Tssr90907	transcription start site region 90907	713 bp downstream
Tssr90908	transcription start site region 90908	726 bp downstream
Tssr90909	transcription start site region 90909	767 bp downstream
Tssr90910	transcription start site region 90910	789 bp downstream
Tssr90911	transcription start site region 90911	836 bp downstream
Tssr90912	transcription start site region 90912	1253 bp downstream