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rs49243605 SNP Detail
Summary
  • ID
    rs49243605
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:27281442 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATCTATCACA TGTTTGCAAT AGAAGTAATG CACATGGGGG
    TAGTAGAGGT TTTTGTTCGT TGCTGAATCA GTTGTACTCA AAAACTTCCC AGCACACACA
    R
    GGGATTCAGT TATTGGCTGT ATGATGGGTG CTTGAAGAGT CTGAATAAGA GTCTAAATTC
    TCATATAAAC CAACCACGGT AGTATAACTT GGTGACTTAT                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss60380269 NES15882864 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs49243605 SNP G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60380269 NES15882864 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:27281442 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Nceh1 neutral cholesterol ester hydrolase 1 Intron
Noncoding-Transcript-Variant
Rr574372 regulatory region 574372 378 bp proximal
Rr574373 regulatory region 574373 1788 bp proximal
Rr574374 regulatory region 574374 1811 bp proximal
Tssr28616 transcription start site region 28616 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory