rs49238192 SNP Detail

Summary

• ID
  rs49238192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138280269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT GACAAGACTC CAGTGCTGGG
  K
  CCCTTCCCAG GCCTAAGCGG CTGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147650062	ENSMUSSNP2213579	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss321374812	CHEV_4_138108873	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49238192					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138280269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15154	CpG island 15154	1819 bp proximal
Rr602963	regulatory region 602963	187 bp proximal
Rr602964	regulatory region 602964	1459 bp proximal