rs49235552 SNP Detail

Summary

• ID
  rs49235552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84395613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGTCC ACCAGCATGA
  TAGCTGACAT TAGAGGTAGA CAGAGAGGAA GGGGAGTAGG AAGCCAAAGT CACCCGCACA
  GCCTAATGTC TAAGTCAGCA CTTATGTGAT GCCCAGTTCA TTGCTCACTA ACATGGTAGT
  GCTATTCTGA GAGGAGGCTC CAGTCGTCTG GATCCTCAGA ACGCCGGCTC TTCCCTCTTC
  R
  TTTTGCCTAC ACTAAGTCAA CCCTCAGCAA ATCGAGTGGT TCAAAGGTGA ATAGTGTCCC
  TTACTGCCCT TAAAAGGTAT GCAAAAGCAG GCATGTAAGA GAGAACTTTT TCCACCATTT
  TATTTTTGTT GTCTATATTT ACTTCAAATC AGTGAATTTC TAAGCGAGGT TCGGGTAACT
  GAAGGGCCCT TACGAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60500396	NES16526161	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49235552					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500396	NES16526161	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84395613 () rs orientation: forward

Symbol	Name	Function Class
Gm2477	predicted gene 2477	153 bp downstream
Rr392066	regulatory region 392066	1729 bp downstream