rs49233609 SNP Detail

Summary

• ID
  rs49233609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156820541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTTCATT GATCTACTTG GTAGCTGTTA GAATACACTA
  AAATTGGATA GTGCTGATTC TGGAAGTCAG GGACATAGAA ACATCTGTTG GTCCCCCATG
  Y
  CCAATCCCCC TCTTGTTCTC TCTCTGTACA AAGGCTTGAT GCCCCGCTAT CATCTGTTTT
  AGTAATCACA AAAGATTTAC ATGAGTGGAT TCCCCTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145811214	ENSMUSSNP5981697	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49233609					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156820541 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	800 bp upstream
Rr372293	regulatory region 372293	745 bp upstream
Rr421298	regulatory region 421298	1446 bp distal
Rr421299	regulatory region 421299	1290 bp distal
Rr421300	regulatory region 421300	within coordinates
Rr421301	regulatory region 421301	971 bp proximal