rs49233476 SNP Detail

Summary

• ID
  rs49233476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105806764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GATATGAAGA GGCTCAAGGA
  Y
  GTTTGGATAA GTTATGGGCT TTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135578425	ENSMUSSNP523685	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320863593	CHEV_3_105702366	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49233476					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105806764 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	401 bp upstream
Rr582806	regulatory region 582806	196 bp distal
Rr582807	regulatory region 582807	89 bp proximal
Rr582808	regulatory region 582808	521 bp proximal
Rr582809	regulatory region 582809	902 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron
Tssr34935	transcription start site region 34935	1382 bp downstream