rs49233125 SNP Detail

Summary

• ID
  rs49233125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15638131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTTTCT CACTCTGTCA
  CATAATTTAT TTGTAAGAAC ATCTGTTGAG TGTATGTGTA ACGTCTATGA AAAGATTAAT
  GTGCCAAAAC CTTTGGGTGT AAAGGAAAAC CTCGGAGACC TCCGGGCCTA GTTACACAGC
  GATTTGGTTG GAAGGGCTCA CCAGTGTCCT CTAAGCATGG GTTGAAGGCG TTCTCCTGTT
  R
  GAGAGTGTGG TATTGCTTGG TTCTTTTTCT CCGTATTTCT GAGGTCATTA TCATTGTCAA
  GGGAGGACTT TCTAGAATCA TTTTGAGCCA ATTCTTCTGA AAATAAGACA ACATGGTTTG
  ACGTTGTTGT TTTGTTTCTT CTTTAATAGG TAGAAAGGCC ATGGTTTTAG TCAGAGGAAG
  TGAAAAAAAA ATTGTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865412	NES15989634	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49233125					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865412	NES15989634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15638131 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	within coordinates
Gm44039	predicted gene, 44039	within coordinates
Rr626670	regulatory region 626670	442 bp proximal
Rr626671	regulatory region 626671	1262 bp proximal