rs49232210 SNP Detail

Summary

• ID
  rs49232210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138280681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA TGCAATGCTG CCTGTAGCAT
  Y
  GGGGTCCAAG TCCCAGCTGG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147650073	ENSMUSSNP2368725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321374818	CHEV_4_138109285	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49232210					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138280681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15154	CpG island 15154	1407 bp proximal
Rr602963	regulatory region 602963	within coordinates
Rr602964	regulatory region 602964	1047 bp proximal
Rr602965	regulatory region 602965	1688 bp proximal