rs49231398 SNP Detail

Summary

• ID
  rs49231398
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135795561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGATGCT GGGAATCGAA
  CCCAGGTCCT TTGGAAGAGC AGTCAGTGCT TTTAATTAAA GGCTCAGTGG TTAAGGGCAC
  TTGGTTTTCT TCCAGAGGAC CTAGGCTCGG TTCCCATCAC TTACATGGTG GTTCACAACA
  ATCTCTAACT CCAGTTCCTG GAGGATTCCT TGTCCTCTTT TGGCCTCCTC AGGCATTAGG
  C
  TATTAATAAA CAATCCCTTA TTAATTTGTC TACTATTTTC TATTAATCTT TTAAAAATTT
  CTTTTTACAC TTATTCATGT GCGGTATACA TGTGTTTCTG GACACATGCA TGCTGTGCAT
  GTGTGTAGAG GTCAGAGGAC AGTTTTTGGA AGTGGGTTTT CTCTTTCCAC CGTGTAGGTC
  CAGGGGATGG ACCTCAATGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147557321	ENSMUSSNP5854081	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49231398					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135795561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	1740 bp proximal
Rr602257	regulatory region 602257	1578 bp proximal
Rr602258	regulatory region 602258	1862 bp proximal