rs49229308 SNP Detail

Summary

• ID
  rs49229308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170824900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GAATCTCATA GAGGCATTCC
  Y
  TCAACTGTGG CTCCTTTCTC TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146150292	ENSMUSSNP6675870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320115462	CHEV_1_172927462	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49229308					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170824900 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	1605 bp distal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	1594 bp distal
Rr396544	regulatory region 396544	362 bp upstream
Rr396545	regulatory region 396545	1100 bp upstream
Rr423178	regulatory region 423178	275 bp distal
Rr423179	regulatory region 423179	358 bp distal
Rr423180	regulatory region 423180	500 bp proximal
Tssr9941	transcription start site region 9941	1234 bp upstream