rs49228656 SNP Detail

Summary

• ID
  rs49228656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151478236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTTAC AGTGAGCTTC
  ATCAAGGAAC ATTTCTGATT CATTAGAATA TTCACATGAT TTCATAGGAT ATTATCCTAC
  ACTCTAAAGA TATTAAAGAT TTCACTAAGA TCTGATAAAG ACGTTCAACA AATAGAAATG
  GGGCTTAGTT TGAAGCTCAC CAAGCTTCAA AAATATAACT AGAGACAGAC CTACAAGGGG
  R
  GGAAAGCTCA CTACTATGAA AACTTTAAAA CATTGAGGAA GAAACTGGAT GGTCTCAGGT
  TCAGGGGTGG GGCTTGGGGG AGGGTAGAGT TAATATTAAG GAAAGGACTG TATTACCAAG
  AAAGATCTGG GGCTTGTTGC AGTCTTCATC AAAATAACAA TGGTGCTCCT CACAGAACTA
  GAGAAAACAA TCTTAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136098059	ENSMUSSNP4052037	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321026852	CHEV_3_151435563	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49228656					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151478236 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1540 bp distal
Rr587416	regulatory region 587416	1213 bp distal
Rr587417	regulatory region 587417	1282 bp distal