rs49227113 SNP Detail

Summary

• ID
  rs49227113
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135208374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTAGT GCCTGGAATG
  ACAAGAGCCT TTCCATTGTG TTTGTAGCTA AATTCTGCCA CCTTCCCTAC TGTGCAATAA
  ACCTTAAAAA CTAGAGTTTT GTTTTGTTGT TGTTGTTGTT GTTTTAAAGA AAAGATTGGA
  ATAGGGCTGA CAAGATGGCT CAGTGGGCAA ACATGATTTC TACCAAGGCT AACGACCTTA
  A
  GTCAATCCCT GAGACCCACA TAGTGGGAGG AAAGAGTCGC TTCCTATACA TTCTCCTCTG
  GCTCCATACG TGAGGCCTGG CACTTGGGTC CCCCTCCCCC ATCAGTAAAA TGGAAAAAAA
  AAGTTGGAAT TGTATAAGTG GGAGAAACTA GCCTGTAAAT TCTCTTCATG TGAGAAAACA
  CATCTAGCAT GATTGCCTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135926763	ENSMUSSNP1930183	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49227113					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135208374 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585725	regulatory region 585725			223 bp proximal