rs49225550 SNP Detail

Summary

• ID
  rs49225550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83995696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGGTAA TGCAAAAAGA
  GCGTGTGGTT GGCGTTTAGG CTGAGTGGTG TGGTTCCCAC ATGTGTGTGC TGTCAAGAGA
  GAGGGAGACT GGGCAACTTG AGAATCGCTG TCTGACCGCT AAGCATCCAC ATAAGCAGAG
  TTGGTTGTCT GCCCTGCCAA GTCATACAGG GAGCAGGTGT GGAGGGCACG AGCAGGATAT
  Y
  CCCTCTGAAA GTGTTGTGTC CCTCAAAATG AAAAGGGCCG GGACCATGCC CCCGCCCCAC
  CCCCATTTAC CTGCTGGAGT GTGTGGGGGT GGAGGTGGGG AAGAGAAGCT TGGGTGCTGT
  TGGGAAGGAT CTTCCTAAGC TGTTACAGGA TCAGACAACA CACAGATGCG TGCTCAGGAC
  TGGAATGACT TAAGGGTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905566	NES15954301	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49225550					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905566	NES15954301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83995696 () rs orientation: forward

Symbol	Name	Function Class
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	992 bp distal
Rr632976	regulatory region 632976	1105 bp distal
Rr632977	regulatory region 632977	207 bp proximal
Rr632978	regulatory region 632978	319 bp proximal
Rr632979	regulatory region 632979	1255 bp proximal
Tssr1912	transcription start site region 1912	680 bp upstream
Tssr57398	transcription start site region 57398	632 bp upstream
Tssr57399	transcription start site region 57399	650 bp upstream