rs49224428 SNP Detail

Summary

• ID
  rs49224428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116014205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTTTG TGTATGCTTG
  GCCCAGGGAG TGGCCCTATT AAGAGGGTGG CCTTGTTGGA GTAGGTGTGT CACTGTGGTC
  GTGGGCTGAA GACCCTAACC CTAGCTGCCT GGGAGGCAGT CTTCCACTAG CAGCCTTCAG
  ATGAAGATGT AGAATTCTCG GTTCTGCTGC ACCATGCCTG CCTGGATGCT GGCTGCCATG
  Y
  TCCCACCTTG ATGGTAATAG ACTGAACCTC TGAACCTGTA AGCCAATTAA ACCTGTAAGC
  CCCAATTAAA TGCTGTCCTT TATAAAAAAT AATAATAATA AAAATAAAAA GTAAAAGCAT
  CTCACGCGGC TGCCAGAGAT GTAACGGCCC ATGCTTAAGA CTTCCTTTAC TTATGTTCAA
  ACTCCCAGGA AATACCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135669497	ENSMUSSNP3620111	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49224428					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116014205 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	368 bp proximal
Rr583674	regulatory region 583674	1955 bp proximal