rs49221380 SNP Detail

Summary

• ID
  rs49221380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:110501873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCTTTT CATTTTCTGT
  TTTGGCTTTT TCGAGGCAGA GTTTCTCTGT CCTGGCTGTC CTGGAACTTA CTCTGTAGCC
  CAGGCTAATC TCCAACTCAG AGAACCACCT GCCTCTGCCT CCCGAGTGTT GGAATTAAAA
  GGCTGCACCT CCATGGTCAA GCTTACATGC TCTCTTCCAC TCTCCCCTCT CCTTGTCTTT
  Y
  CCTTTTCCCA GGTTAGACAA CACTCTTCAA CCTTGAGTTG AGGGGAGGTC AAAGCAAGGA
  CGTCCCGGAG TGGGTGGAGC CAATATCTGA CCGGAGAAGC CCCCTGGGAC CTGGGTCTGC
  TGCTGCCTTA AAGCAGGTGA ACAAAACCCG GGTGTTTCAG GGGATCGGAG AGATGTGTCG
  AAACAATTCT GAGTGTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218268	NES16714783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49221380					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218268	NES16714783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110501873 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrcol1	leucine rich colipase-like 1			Intron
				Noncoding-Transcript-Variant
Rr616873	regulatory region 616873			859 bp proximal
Rr616874	regulatory region 616874			919 bp proximal