rs49220525 SNP Detail

Summary

• ID
  rs49220525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133943717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGACTT GCTGTGATTG
  AAGGATGCCT GCCAGTTTCT AATCCAGCCG GAGGGAGGTT CCTTATCTTG CTTTACTTTG
  CCTAATAGGG ATTTGTTTAC ATAAACCCCC CTTTTTTTAG GGTGCCTCAT CAGTAGACCT
  TGAAGTTTTC AAATTTGAAG TTTGGACATA ATGCTTCATT AATCTAATTA TAAGCATAAT
  K
  ACTATAATTG ATATGCATTT GAAACTCTGA AATTTTGAGA CAGAGATTGC TAGGCCCTCA
  GTTTTAATTC CACACCAACC TCTAGGCTTC AGAAGAAGCC AGAGAAAGGT ACTCTGGCAA
  AGAAAAAAAT AAATAGGGAA ACAAAGAAAC TGTTTTTTTA AGGTGAATAT ACATTTTATA
  TTTTTGCTTT AATTCTTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135919720	ENSMUSSNP5816949	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49220525					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133943717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13850	CpG island 13850			1317 bp distal
Cpgi13851	CpG island 13851			1249 bp proximal
Cxxc4	CXXC finger 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr585624	regulatory region 585624			1455 bp distal
Rr585625	regulatory region 585625			77 bp distal
Tssr31786	transcription start site region 31786			1583 bp downstream
Tssr31787	transcription start site region 31787			1456 bp downstream
Tssr31788	transcription start site region 31788			1414 bp downstream
Tssr31789	transcription start site region 31789			1362 bp downstream
Tssr31790	transcription start site region 31790			1298 bp upstream
Tssr31791	transcription start site region 31791			1330 bp upstream