rs49216861 SNP Detail

Summary

• ID
  rs49216861
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137772437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGCAGCC TCTCCGGTGC TGGCTGACCT TGCTTTCCTC
  GCTGTGCGCT GTGTTGCTTG CTCCTCTCTA ACGGCGGTTG ACTCTCAGGA TGGTTTTGAA
  A
  GCTCTGGCCC TACTTTTCAT GTCCAGTGGG AACGATGTGG AGAAATGGAG CTAATCTCAT
  CAGGAGGTTT GAAATGGTTG CTTTTCCAGT TTCTTGGGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147630332	ENSMUSSNP361916	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321369983	CHEV_4_137601041	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49216861					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137772437 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			844 bp proximal
Rr602828	regulatory region 602828			936 bp proximal
Tssr39818	transcription start site region 39818			221 bp upstream
Tssr39819	transcription start site region 39819			679 bp upstream