rs49214790 SNP Detail

Summary

• ID
  rs49214790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141168959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTAATTA GGAAAAACAG
  CCAAAAGACG GGTATAACTA ATAACTGCCC AATTCTACAA CTTTATGGTT GTTGTTGTTT
  GAGACAGGTT CTCTCTTCAT AGCCCTGACC ATTTTGGAGT CCCCAAGCTG GCTTTAAACT
  TACAGTGATT CTCCTGCTTC TGCCTCCTGA GTTCTGGGGT GACAAGCATA GCCCACCACA
  Y
  CTAACACTTC ACAACTTTGC AGTCTTGTTT ACATAACACT AACTCTGCAC AGAGATTTCT
  CTGACAGACT TCAAGCTCTT ATTCTTCTTT TGGGAAAATT ATAGAGAAAA CCACTAGATT
  TAACCATAGT CTCTTCATGA TATTGACAGG TTATTAGCAC CATCCCCCCA TGGTAGCCAT
  TGTCTTCATA AAACCATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092730	NES16592211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss320992367	CHEV_3_141126162	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49214790					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092730	NES16592211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141168959 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	351 bp distal
Rr586319	regulatory region 586319	1528 bp proximal
Rr586320	regulatory region 586320	1784 bp proximal
Tssr1065	transcription start site region 1065	1497 bp upstream
Tssr32031	transcription start site region 32031	1918 bp upstream
Tssr32032	transcription start site region 32032	1981 bp upstream
Tssr35916	transcription start site region 35916	1377 bp downstream