rs49214053 SNP Detail

Summary

• ID
  rs49214053
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155236516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTAAGG TGTGCAAAAA
  TTTTCAGTTT ATTTTTTATA GAATAAGTAT ATTTCCCTGA ATATATTTTA TTTCATACAG
  TATAATTTGT GTATTTTAAT GGTTCTAAAC AAATTTTTAT AATGCTTAGA CTGTAGTAGA
  CATTTAATAC ATAGCTATTA AATTAAAATG CCCAGGAAGT CATTATCATA GGCATCTATT
  K
  GAAAGTGGAT AGGATGAATT CTTAGGATGC ATGAAGAAGC CACTATATCC ATGACACACA
  CATTCACCTG TGAAGACTGT CACTGTTCAC TAGCACCTCA GAGCCACTTT GTTCAATTGC
  AGTTCCCAAA TGACCACTAG ATGGTGGAAG TCTTAGTTAT TCTAGGTCTT ATTGGGCTCA
  GAGAATTTCC ATTTCTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61103987	NES16605867	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49214053					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61103987	NES16605867	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155236516 () rs orientation: forward

Symbol	Name	Function Class
Gm33266	predicted gene, 33266	1585 bp upstream
Rr375954	regulatory region 375954	603 bp upstream
Rr587935	regulatory region 587935	130 bp proximal