rs49212327 SNP Detail

Summary

• ID
  rs49212327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57600451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGTCCT GAAAATTCTC
  TGTAAAACGT CTGCATGGAA GCATTCTAGT TTCCATAACA ACTTTGTGTA CTTGTTCTCT
  GGCAGTGTGT CCAATCCTGC CATGGGTTTA CAGAACAATA CCCATTTGTA CCAGAAAAAT
  GAAAGTGGCC TTTCCCTTCC CATTCTTGCA TAATAAAATC TGCCTCATAG CAACACAATA
  K
  AAATGATATT TCTTTCAGTC TTTGTGCTAC TAAGAACAAT TTGCTGTTGT GATCTCTTTC
  TACCCCTCTT GGCCTCAATG GGAATTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTGAAA ATAAAGTTTT CTCTCATACA ATACATCCCA ACCACAATTT CCCCTCCCTC
  CACCCCTCAC ACCTCCTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60414467	NES15915190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs49212327					SNP	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414467	NES15915190	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57600451 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	493 bp upstream
Rr577155	regulatory region 577155	902 bp distal
Tssr33337	transcription start site region 33337	481 bp upstream