rs49211221 SNP Detail

Summary

• ID
  rs49211221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAGATC ATTTGCCACA
  TGGCTAATAA GTAGCAAAGC CAGGATGGGG ATGTCAGCTG TCTGACTTTG TAAAGCCATT
  CATCAAGCAA TGCCCAAGGG CACTGGGCAA AGAGAGACAC GGGCTGAAGG TTAAATCAAT
  CTTCATGCGG GAGCTGGACC AAGCCTCCTC CTCTGCCAAA CTCCCGGAGA TGCTTATAGA
  Y
  GGATAGGAAA ACTCTAGGTA GAACCTTGTG TTATTCTATT CTGCAGAAAC GTATAGACCT
  TAGATTGCTT CATACTTTTA TTTGGATCTC CCCAGCCACA GAGGCCACAC CCTGAGCCAG
  TCACCGGAAG AACAAGATTA TCGCTTTCAA GAATCTGAAA TCACAAAGGG TTAGTATTTA
  GAATATAGAA AGAACATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435439	NES15933049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49211221					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435439	NES15933049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763756 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	1237 bp distal
Palmd	palmdelphin	1120 bp upstream
Rr583817	regulatory region 583817	1830 bp distal
Rr583818	regulatory region 583818	789 bp distal
Tssr35360	transcription start site region 35360	1556 bp upstream
Tssr35361	transcription start site region 35361	1539 bp upstream
Tssr35362	transcription start site region 35362	1474 bp upstream
Tssr35363	transcription start site region 35363	1415 bp upstream
Tssr35364	transcription start site region 35364	1339 bp upstream
Tssr35365	transcription start site region 35365	1318 bp upstream
Tssr35366	transcription start site region 35366	1292 bp upstream
Tssr35367	transcription start site region 35367	1273 bp upstream
Tssr35368	transcription start site region 35368	1169 bp upstream
Tssr35369	transcription start site region 35369	1103 bp upstream
Tssr35370	transcription start site region 35370	1080 bp upstream
Tssr35371	transcription start site region 35371	584 bp upstream